Accounting for Logistics
UAE 2026
How UAE freight forwarders, customs brokers, and transport businesses book shipments, recharge customs duties, reconcile carrier statements, and close per-shipment margin — across CargoWise / Logi-Sys management software, Mirsal 2, and Zoho Books.
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Frequently Asked Questions
How do you do accounting for a UAE freight forwarder?
UAE freight forwarders and customs brokers run accounting around one anchor: the shipment file. Every cost (carrier freight, port handling, customs duty), every advance (Retainer Invoice into Unearned Revenue when the client deposits up front) and the final client invoice all tag back to that shipment number. Costs split into two buckets — the forwarder’s own costs vs pass-through (billable) disbursements — both ideally routed through WIP and released at invoice. Per-shipment margin = sell rate − own costs; pass-throughs net to zero.
How should carrier costs and customs duty actually be booked?
Two cost types, same mechanic under automation. Forwarder’s own costs (carrier freight, port handling, etc.) and pass-through (billable) costs (customs duty, demurrage) both ideally route to mirror WIP — [cost type] balance-sheet accounts and release to their matching P&L expense at invoice time, so cost and revenue land in the same period. The Skrooge app automates the WIP routing + per-line release JE; without automation, most small forwarders just let costs hit P&L immediately (margin swings month-to-month for own costs) and use Zoho’s billable-expenses feature for pass-throughs (net-zero P&L over the lifecycle, timing-lumpy).
How do you handle a customer advance / deposit before the shipment ships?
Use Zoho’s Retainer Invoice module, not a regular invoice. The advance posts to Unearned Revenue (balance-sheet liability) and 5% VAT is due at issuance under UAE timing rules (earliest of invoice / payment / supply). At final-invoice time, the retainer credit is applied — Unearned Revenue moves to Revenue against the matching invoice line with no new VAT, and the final AR shows only the net amount the client still owes. Booking an advance as a regular invoice posts revenue immediately and breaks the deferral.
How do you track per-shipment margin in CargoWise + Zoho Books?
The shipment number is the universal tag — it goes on every Bill, every Retainer Invoice and the final client invoice. With Skrooge automation, the WIP balance per shipment is your real-time open-jobs read; without it, margin = Bills-tagged-to-shipment vs Invoices-issued, run as a Zoho Books project P&L. CargoWise’s native job-profitability dashboard shows the same numbers from the ops side — the two views should reconcile shipment-by-shipment at month-end close.
How is UAE VAT handled on freight forwarding?
International transport of goods is zero-rated under UAE VAT (Article 33 of the VAT Decree-Law) when the shipment crosses the UAE border. UAE-domestic legs — trucking inside the country with no international leg — are standard-rated 5%. Foreign-carrier bills (e.g. an overseas line invoicing in USD) are handled under reverse charge: 5% in / 5% out on the VAT return, net zero. Customs duty disbursements sit outside VAT scope — not a taxable supply when recharged at cost.
What about Corporate Tax for free-zone forwarders (JAFZA, DAFZA)?
Free-zone forwarders need to check Qualifying Free Zone Person (QFZP) eligibility against the FTA’s qualifying-activities list — logistics services typically appear, but exact scope (storage, transport, customs clearance, freight forwarding) should be verified against the latest Cabinet Decision before claiming 0%. Otherwise the standard rules apply: 9% on taxable income above AED 375,000, with Small Business Relief available if revenue ≤ AED 3M for both the current and immediately preceding tax period (current Cabinet Decision sunsets 31 December 2026).
Need help with accounting for your logistics business?
Skrooge runs accounting & tax for UAE freight forwarders and customs brokers — shipment-tagged bookkeeping, retainer invoicing, customs disbursements and per-shipment margin are part of the service.